Genomics and Proteomics in Mesothelioma
Advances in molecular biology over the past decade have improved our
understanding of genetic, transcriptional, and translational alter¬ations in
human cancers. The sequencing of the human genome has resulted in the
identification of many known and novel genes. Several groups are engaged in
determining the interactions and regulation of all these genes to ascertain
their function in early detection and pre¬vention of cancer. Recent advances in
functional genomic technology have begun to investigate interactive pathways to
elucidate what, where, when, and how these genes are expressed in an
orchestrated fashion. Other groups have concentrated on proteomics, or the study
of proteins, including their relative amount, distribution, posttransla-tional
modifications, functions, and interactions to address fundamen¬tal biologic
questions in the progression of a disease from a normal to a cancerous state.
This chapter discusses the functional genomics and expression proteomics
approaches employed to date in general and their relevance to mesothelioma in
particular. It is our attempt to provide both novice and experienced
investigators in this field with novel methodologies used in other types of
cancers that might ulti¬mately lead to the early detection and treatment of
mesothelioma.
Genomics in Cancer Research
The Human Genome Project analysis has described 30,000 to 50,000 genes after DNA
sequencing analyses. In spite of 20% to 30% differ¬ences observed between the
predicted transcriptomes by International Human Genome Sequencing Consortium
(HGSC) and Celera Genomics, these data have provided a tremendous stimulus for
sys¬tematic analysis of various types of cancer. High-resolution analysis of
chromosomal aberrations, genome-wide mutation screens, and ex¬pression profiling
have given investigators a comprehensive view of genetic alterations in many
cancers. These high-throughput tech¬nologies are being vigorously pursued to
gain a complete list of the molecular and genetic causes that drive malignant
transformation and
the possible therapeutic options that may be exploited for clinical benefit.